By your comment about no marks on the ammo, I doubt endplay will be the culprit. you say you have a .003 cylinder gap, and I can say that's NOT a lot. I see revolvers with as much as .012 and they still work. And a .005 to .007 is very common in many revolvers. So a .003 is NOT a lot.
Try this;
With an EMPTY gun,,, VERY, VERY slowly cock it. Watch the cylinder as it rotates. When it locks back, stop for a moment, THEN pull the hammer a bit more. It SHOULD actually move the cylinder a little more. The design is such, that the momentum & weight of the cylinder is supposed to rotate on over into the locked position. Very slow cocking sometimes prevents this.
And to see if it's only happening at one spot, when out actually shooting it, using a crayon, mark the chamber(s) that fail to fire. If it happens on all chambers at different times,, then you have a possible worn hand, or even a worn ratchet section on the cylinder. More common will be the hand problem, as it's a part some folks "gunsmith" on.
An OM Ruger is one of the easier handguns to disassemble & work on too. I have books on gunsmithing that show how to do a lot of disassembly & re-assembly, (Gun Digest publishes excellent books on this,) but you can most likely find a "how-to" on the internet.